A Chromosome-Level Genome Assembly of the Anglerfish Lophius litulon

Lv, Meiqi and Zhang, Yaolei and Liu, Kaiqiang and Li, Chang and Wang, Jiahao and Fan, Guangyi and Liu, Xin and Yang, Huanming and Liu, Changlin and Mahboob, Shahid and Liu, Junnian and Shao, Changwei (2020) A Chromosome-Level Genome Assembly of the Anglerfish Lophius litulon. Frontiers in Genetics, 11. ISSN 1664-8021

[thumbnail of pubmed-zip/versions/2/package-entries/fgene-11-581161-r1/fgene-11-581161.pdf] Text
pubmed-zip/versions/2/package-entries/fgene-11-581161-r1/fgene-11-581161.pdf - Published Version

Download (2MB)

Abstract

Anglerfishes are a highly diverse group of species with unique characteristics. Here, we report the first chromosome-level genome of a species in the order Lophiiformes, the yellow goosefish (Lophius litulon), obtained by whole genome shotgun sequencing and high-throughput chromatin conformation capture. Approximately 97.20% of the assembly spanning 709.23 Mb could be anchored to 23 chromosomes with a contig N50 of 164.91 kb. The BUSCO value was 95.4%, suggesting that the quality of the assembly was high. A comparative gene family analysis identified expanded and contracted gene families, and these may be associated with adaptation to the benthic environment and the lack of scales in the species. A majority of positively selected genes were related to metabolic processes, suggesting that digestive and metabolic system evolution expanded the diversity of yellow goosefish prey. Our study provides a valuable genetic resource for understanding the mechanisms underlying the unique features of the yellow goosefish and for investigating anglerfish evolution.

Item Type: Article
Subjects: Research Scholar Guardian > Medical Science
Depositing User: Unnamed user with email support@scholarguardian.com
Date Deposited: 06 Feb 2023 08:40
Last Modified: 27 Sep 2023 06:26
URI: http://science.sdpublishers.org/id/eprint/105

Actions (login required)

View Item
View Item